karl's bookmarks: Software for molecular biology

• GENtle - "GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and more.It is free software under GPL"
• PlasMapper - "The PlasMapper server automatically generates and annotates plasmid maps using only the plasmid DNA sequence as input. Plasmid sequences up to 20,000 bp may be annotated and displayed. Plasmid figures may be rendered in PNG, JPG, SVG or SVGZ format. PlasMapper supports an extensive array of display options. "
• tacg - " tacg is a command-line program that performs many of the common routines in pattern matching in biological strings. It was originally designed for restriction enzyme analysis and while that still forms a core of the program, it has been expanded to fill more roles, sort of a 'grep' for DNA. However, it is also more than that: a brief description of its abilities is at the bottom of this page."

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