karl's bookmarks: Ressources

• BioModels Database - "The BioModels Database is a new effort to develop a data resource that will allow biologists to store, search and retrieve published mathematical models of biological interests. The models in the BioModels Database are annotated and linked to relevant data resources, such as publications, databases of compounds and pathways, controlled vocabularies, etc."
• dbEST Summary
• OMGProm -- Ohio State University - OMGProm is an integrated resource of Orthologous Mammalian Gene Promoters.
• Welcome to the BMERC
• Gerstein Group -- Yale Bioinformatics
• OpenInformatics.org
• http://www.nghri.nih.gov/genome_hub.html
• http://www.ensembl.org
• http://www.celera.com
• http://www.informatics.jax.org
• http://www.nih.gov/science/models/mouse
• http://www.ncbi.nlm.nih.gov/genome/seq/MmHome.html
• http://www.hgsc.bcm.tmc.edu/rat
• http://www.nih.gov/science/models/rat
• http://www.rgd.mcw.edu
• http://www.sanger.ac.uk/Projects/D_rerio
• http://zfin.org/ZFIN
• http://www.jgi.doe.gov/programs/fugu.htm
• http://www.genoscope.cns.fr/externe/tetraodon
• EMBL: Sequence Analysis Service : Gibson Group
• GenePix File Formats
• Repbase Update - Genetic Information Research Institute
• RTPrimerDB: the real-time PCR primer and probe database - Homepage - "RTPrimerDB is a public database for primer and probe sequences used in real-time PCR assays employing popular chemistries (SYBR Green I, Taqman, Hybridisation Probes, Molecular Beacon) to prevent time-consuming primer design and experimental optimisation, and to introduce a certain level of uniformity and standardisation among different laboratories."
• Eukaryotic Promoter Database
• Transcription factor database
• TRANSFAC - The Transcription Factor Database
• The JASPAR database - A free alternative to Transfac
• Transcriptional Regulatory Regions
• Fish repeats from WashU - Fasta file of fish repeats used by the zebrafish genome project with RepeatMasker.
• WashU-Zebrafish Genome Resources Project - Here can be downoladed WashU's ESTs
• Download TFD database - The gcg findpatterns file is named sitedata.gcg
• BIND - The Biomolecular Interaction Network Database
• Gene Expression Omnibus Home
• ProDom home page
• DBTSS HOME - Database of Transcriptoinal Start Sites
• Sequence Ontology
• The EMBL Nucleotide Sequence Database
• WebQTL
• WikiGene - WikiGene - "WikiGene is a scientific project that follows a community-based approach to collect data about genes and gene regulatory events. As in the Wikipedia project, everyone who is interested can take part and contribute to the project. As part of the Wiki concept, the WikiGene pages can be edited by everyone. Data that is collected by this collaborative effort will in turn be freely available to everyone."
• UCSC Genome Browser Home

Generated by bk2site.